| _version_ | 1866901553150951424 |
|---|---|
| author | Kondo, Kohei |
| author_facet | Kondo, Kohei |
| contents | <p><strong>The code used in this study</strong></p> <p>This archive contains the notebooks/scripts and minimal input tables used to generate the main and supplementary figure panels for our manuscript on SadR in <em>Staphylococcus aureus</em> ST188.</p> <h3>Directory structure</h3> <ul> <li> <p><code>code_availability/</code></p> <ul> <li> <p><code>Fig.1/</code>, <code>Fig.2/</code>, <code>Fig.4/</code>, <code>Fig.5/</code>: figure-specific code and input tables</p> </li> <li> <p><code>supplementary_fig/</code>: code and input tables for supplementary figures</p> </li> </ul> </li> </ul> <h3>How to run</h3> <ul> <li> <p><strong>Python notebooks (<code>.ipynb</code>)</strong>: open in JupyterLab/Jupyter Notebook and run cells from top to bottom.</p> </li> <li> <p><strong>R Markdown (<code>.Rmd</code>)</strong>: knit in RStudio or run via <code>rmarkdown::render()</code>.</p> </li> </ul> <h3>Notes</h3> <ul> <li> <p>CSV files in this archive are figure-level inputs (and/or intermediate tables) used for plotting.</p> </li> <li> <p>Large raw datasets (e.g., genome assemblies/FASTA files) are available through the public repositories and accession numbers provided in the manuscript’s Data Availability section.</p> </li> <li> <p>PDF files are example outputs for reference. Figures were generated from the code at the time of submission; in a small number of cases, minor graphical adjustments (e.g., layout/label positioning) were made in Adobe Illustrator for publication-quality presentation.</p> </li> </ul> <h3>Contact</h3> <p>Kohei Kondo (<a rel="noopener">kondo.ko@jihs.go.jp</a>)</p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_18934443 |
| institution | Zenodo |
| language | |
| publishDate | 2026 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | Code availability for "RNase-based defence preserves methicillin susceptibility in Staphylococcus aureus": SadR/ST188 Kondo, Kohei <p><strong>The code used in this study</strong></p> <p>This archive contains the notebooks/scripts and minimal input tables used to generate the main and supplementary figure panels for our manuscript on SadR in <em>Staphylococcus aureus</em> ST188.</p> <h3>Directory structure</h3> <ul> <li> <p><code>code_availability/</code></p> <ul> <li> <p><code>Fig.1/</code>, <code>Fig.2/</code>, <code>Fig.4/</code>, <code>Fig.5/</code>: figure-specific code and input tables</p> </li> <li> <p><code>supplementary_fig/</code>: code and input tables for supplementary figures</p> </li> </ul> </li> </ul> <h3>How to run</h3> <ul> <li> <p><strong>Python notebooks (<code>.ipynb</code>)</strong>: open in JupyterLab/Jupyter Notebook and run cells from top to bottom.</p> </li> <li> <p><strong>R Markdown (<code>.Rmd</code>)</strong>: knit in RStudio or run via <code>rmarkdown::render()</code>.</p> </li> </ul> <h3>Notes</h3> <ul> <li> <p>CSV files in this archive are figure-level inputs (and/or intermediate tables) used for plotting.</p> </li> <li> <p>Large raw datasets (e.g., genome assemblies/FASTA files) are available through the public repositories and accession numbers provided in the manuscript’s Data Availability section.</p> </li> <li> <p>PDF files are example outputs for reference. Figures were generated from the code at the time of submission; in a small number of cases, minor graphical adjustments (e.g., layout/label positioning) were made in Adobe Illustrator for publication-quality presentation.</p> </li> </ul> <h3>Contact</h3> <p>Kohei Kondo (<a rel="noopener">kondo.ko@jihs.go.jp</a>)</p> |
| title | Code availability for "RNase-based defence preserves methicillin susceptibility in Staphylococcus aureus": SadR/ST188 |
| url | https://doi.org/10.5281/zenodo.18934443 |