Enabling Efficient Drug Substance Manufacturing: mRNA and Biologics – From Reaction to Purification

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Main Author: Prasad, Akanksha
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Published: Zenodo 2025
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author Prasad, Akanksha
author_facet Prasad, Akanksha
contents <p>Biologics manufacturing is rapidly evolving to meet global</p> <p>demand for mRNA therapeutics, recombinant proteins,</p> <p>monoclonal antibodies, and vaccines. However, current</p> <p>bottlenecks—including long cycle times, costly reagents, and</p> <p>inconsistent yields—limit scalability and responsiveness.</p> <p>Addressing these challenges requires an integrated strategy</p> <p>spanning upstream synthesis, capping efficiency, purification, and</p> <p>scale-up.</p> <p>For mRNA production, innovations in <strong>template design </strong>such as</p> <p>plasmids with built-in poly(A) tails and minicircle DNA reduce</p> <p>enzymatic steps and impurities, streamlining in vitro transcription</p> <p>(IVT). Process variability can be further minimized by</p> <p>applying <strong>design-of-experiments </strong>approaches and <strong>real-time PAT</strong></p> <p><strong>tools </strong>(Raman, inline UV), enabling adaptive IVT control and</p> <p>improving reproducibility. <strong>CleanCap® technology </strong>offers a one-</p> <p>pot solution for co-transcriptional capping, achieving 90–99%</p> <p>efficiency and mimicking natural Cap1 structures. While specific</p> <p>variants such as CleanCap M6 have shown lower efficiencies</p> <p>under certain conditions, optimization and comparability studies</p> <p>support its advancement as a superior alternative to enzymatic</p> <p>capping.</p> <p>Protein and vaccine platforms benefit from <strong>advanced process</strong></p> <p><strong>controls </strong>for nutrient and oxygen regulation, engineered cell lines</p> <p>for consistent glycosylation, and perfusion culture systems that</p> <p>deliver three- to four-fold higher productivity compared to fed-</p> <p>batch.</p> <p>Downstream, <strong>integrated purification strategies</strong>—including</p> <p>mixed-mode chromatography for dsRNA removal, RNase-assisted</p> <p>pre-treatment, tangential flow filtration, and continuous</p> <p>chromatography—improve yield, reduce impurities, and cut</p> <p>operational timelines. Process intensification approaches such as</p> <p>inline buffer conditioning and closed transfer systems further</p> <p>reduce facility footprint and costs.</p> <p>Finally, <strong>digital enablers </strong>including AI/ML models, digital twins,</p> <p>and modular single-use systems are redefining scale-up and</p> <p>technology transfer by predicting risks, ensuring regulatory</p> <p>compliance, and improving global supply resilience.</p>
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publishDate 2025
publisher Zenodo
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spellingShingle Enabling Efficient Drug Substance Manufacturing: mRNA and Biologics – From Reaction to Purification
Prasad, Akanksha
<p>Biologics manufacturing is rapidly evolving to meet global</p> <p>demand for mRNA therapeutics, recombinant proteins,</p> <p>monoclonal antibodies, and vaccines. However, current</p> <p>bottlenecks—including long cycle times, costly reagents, and</p> <p>inconsistent yields—limit scalability and responsiveness.</p> <p>Addressing these challenges requires an integrated strategy</p> <p>spanning upstream synthesis, capping efficiency, purification, and</p> <p>scale-up.</p> <p>For mRNA production, innovations in <strong>template design </strong>such as</p> <p>plasmids with built-in poly(A) tails and minicircle DNA reduce</p> <p>enzymatic steps and impurities, streamlining in vitro transcription</p> <p>(IVT). Process variability can be further minimized by</p> <p>applying <strong>design-of-experiments </strong>approaches and <strong>real-time PAT</strong></p> <p><strong>tools </strong>(Raman, inline UV), enabling adaptive IVT control and</p> <p>improving reproducibility. <strong>CleanCap® technology </strong>offers a one-</p> <p>pot solution for co-transcriptional capping, achieving 90–99%</p> <p>efficiency and mimicking natural Cap1 structures. While specific</p> <p>variants such as CleanCap M6 have shown lower efficiencies</p> <p>under certain conditions, optimization and comparability studies</p> <p>support its advancement as a superior alternative to enzymatic</p> <p>capping.</p> <p>Protein and vaccine platforms benefit from <strong>advanced process</strong></p> <p><strong>controls </strong>for nutrient and oxygen regulation, engineered cell lines</p> <p>for consistent glycosylation, and perfusion culture systems that</p> <p>deliver three- to four-fold higher productivity compared to fed-</p> <p>batch.</p> <p>Downstream, <strong>integrated purification strategies</strong>—including</p> <p>mixed-mode chromatography for dsRNA removal, RNase-assisted</p> <p>pre-treatment, tangential flow filtration, and continuous</p> <p>chromatography—improve yield, reduce impurities, and cut</p> <p>operational timelines. Process intensification approaches such as</p> <p>inline buffer conditioning and closed transfer systems further</p> <p>reduce facility footprint and costs.</p> <p>Finally, <strong>digital enablers </strong>including AI/ML models, digital twins,</p> <p>and modular single-use systems are redefining scale-up and</p> <p>technology transfer by predicting risks, ensuring regulatory</p> <p>compliance, and improving global supply resilience.</p>
title Enabling Efficient Drug Substance Manufacturing: mRNA and Biologics – From Reaction to Purification
url https://doi.org/10.5281/zenodo.19063529