broadinstitute/delphy: 1.3.1
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| Format: | Recurso digital |
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2026
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| _version_ | 1866902304109625344 |
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| author | Patrick Varilly Laura Luebbert, Ph.D. Daniel Park Ben Fry Mark Schifferli Chris Tomkins-Tinch |
| author_facet | Patrick Varilly Laura Luebbert, Ph.D. Daniel Park Ben Fry Mark Schifferli Chris Tomkins-Tinch |
| contents | <h3>Bug fix</h3> <ul> <li><strong>BEAST log output: consistent calendar-aware time conversion.</strong> The BEAST X and BEAST 2 log output in <code>beasty_output.cpp</code> mixed two conventions for converting internal times (days since 2020-01-01) to years: <code>to_linear_year</code> (calendar-aware, accounts for leap years) for <code>age(root)</code>, but simple <code>/ 365</code> division for <code>rootHeight</code> and <code>age(TIP)</code>. This introduced a systematic error of ~2 days over multi-year spans for datasets in 2025, a small but perceptible delta that will only grow in the future. All absolute time and time-delta conversions in BEAST log output now use <code>to_linear_year</code> / <code>delta_linear_years</code>. Rate and magnitude conversions (<code>* 365</code> / <code>/ 365</code>) and Newick tree branch lengths are unchanged.</li> </ul> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_19098050 |
| institution | Zenodo |
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| publishDate | 2026 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | broadinstitute/delphy: 1.3.1 Patrick Varilly Laura Luebbert, Ph.D. Daniel Park Ben Fry Mark Schifferli Chris Tomkins-Tinch <h3>Bug fix</h3> <ul> <li><strong>BEAST log output: consistent calendar-aware time conversion.</strong> The BEAST X and BEAST 2 log output in <code>beasty_output.cpp</code> mixed two conventions for converting internal times (days since 2020-01-01) to years: <code>to_linear_year</code> (calendar-aware, accounts for leap years) for <code>age(root)</code>, but simple <code>/ 365</code> division for <code>rootHeight</code> and <code>age(TIP)</code>. This introduced a systematic error of ~2 days over multi-year spans for datasets in 2025, a small but perceptible delta that will only grow in the future. All absolute time and time-delta conversions in BEAST log output now use <code>to_linear_year</code> / <code>delta_linear_years</code>. Rate and magnitude conversions (<code>* 365</code> / <code>/ 365</code>) and Newick tree branch lengths are unchanged.</li> </ul> |
| title | broadinstitute/delphy: 1.3.1 |
| url | https://doi.org/10.5281/zenodo.19098050 |