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Main Authors: Pardo Avila, Fatima, von Heijne, Gunnar, Kudva, Renuka
Format: Recurso digital
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Published: Zenodo 2026
Online Access:https://doi.org/10.5281/zenodo.19210918
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author Pardo Avila, Fatima
von Heijne, Gunnar
Kudva, Renuka
author_facet Pardo Avila, Fatima
von Heijne, Gunnar
Kudva, Renuka
contents <p><span>This repository contains the input files to run the MD simulations for </span></p> <p><span>"Single-residue effects on the behavior of a nascent polypeptide chain inside the ribosome exit tunnel"</span></p> <p> </p> <p><span>The main simulations described in the manuscript are available in the "ModelsBasedOn3JBU" folder. </span></p> <p><span>For each system (G, K, N, and Control), there is a folder containing the input files. </span></p> <p> </p> <p><span>The input files for the test system, built based on <em>8qoa</em>, but using the SecM(Ms) sequence, can be found </span></p> <p><span>in the "ModelsBasedOn8QOA" folder.</span></p>
format Recurso digital
id zenodo_https___doi_org_10_5281_zenodo_19210918
institution Zenodo
language
publishDate 2026
publisher Zenodo
record_format zenodo
spellingShingle Input Files for Molecular Dynamics of E. coli Ribosome Stalled by SecM(Ms)
Pardo Avila, Fatima
von Heijne, Gunnar
Kudva, Renuka
<p><span>This repository contains the input files to run the MD simulations for </span></p> <p><span>"Single-residue effects on the behavior of a nascent polypeptide chain inside the ribosome exit tunnel"</span></p> <p> </p> <p><span>The main simulations described in the manuscript are available in the "ModelsBasedOn3JBU" folder. </span></p> <p><span>For each system (G, K, N, and Control), there is a folder containing the input files. </span></p> <p> </p> <p><span>The input files for the test system, built based on <em>8qoa</em>, but using the SecM(Ms) sequence, can be found </span></p> <p><span>in the "ModelsBasedOn8QOA" folder.</span></p>
title Input Files for Molecular Dynamics of E. coli Ribosome Stalled by SecM(Ms)
url https://doi.org/10.5281/zenodo.19210918