Polishing Long read PacBio-based genome assembly of Ligilactobacillus equi F3d using Illumina NovaSeq6000 short reads
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| Autori principali: | , , , , |
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| Natura: | Recurso digital |
| Lingua: | inglese |
| Pubblicazione: |
Zenodo
2026
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| _version_ | 1866902324185661440 |
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| author | Olyad Erba Urgessa Mesfin Tafesse Gemeda Hunduma Dinka Firayad Girma Abdi Ketema Tafess |
| author_facet | Olyad Erba Urgessa Mesfin Tafesse Gemeda Hunduma Dinka Firayad Girma Abdi Ketema Tafess |
| contents | <p>This dataset contains the refined genome assembly of <em>L. equi</em> F3d. We employed an <em>in silico</em> workflow in usegalaxy.org and usegalaxy.eu to polish a Third-Generation Sequencing (TGS) PacBio-based assembly using high-depth Illumina Next-Generation Sequencing (NGS) NovaSeq6000 raw reads. This integration corrected 86 assembly errors (SNVs/Indels), significantly improving the consensus accuracy of the reference genome.</p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_19238107 |
| institution | Zenodo |
| language | eng |
| publishDate | 2026 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | Polishing Long read PacBio-based genome assembly of Ligilactobacillus equi F3d using Illumina NovaSeq6000 short reads Olyad Erba Urgessa Mesfin Tafesse Gemeda Hunduma Dinka Firayad Girma Abdi Ketema Tafess short read long read Ligilactobacillus genomic polishing <p>This dataset contains the refined genome assembly of <em>L. equi</em> F3d. We employed an <em>in silico</em> workflow in usegalaxy.org and usegalaxy.eu to polish a Third-Generation Sequencing (TGS) PacBio-based assembly using high-depth Illumina Next-Generation Sequencing (NGS) NovaSeq6000 raw reads. This integration corrected 86 assembly errors (SNVs/Indels), significantly improving the consensus accuracy of the reference genome.</p> |
| title | Polishing Long read PacBio-based genome assembly of Ligilactobacillus equi F3d using Illumina NovaSeq6000 short reads |
| topic | short read long read Ligilactobacillus genomic polishing |
| url | https://doi.org/10.5281/zenodo.19238107 |