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| Format: | Recurso digital |
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Zenodo
2026
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| Online Access: | https://doi.org/10.5281/zenodo.19251049 |
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| _version_ | 1866901112565530624 |
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| author | Kotsa, Christina |
| author_facet | Kotsa, Christina |
| contents | <p>A workflow based on Streamlit for AFM fibrillar structure segmentation, height–length analysis, and 3D reconstruction.</p> <p>The workflow is split into two main modules:</p> <p> </p> <p><strong>Module 1: AFM Structure Segmentation (CAE-based)</strong></p> <p> Performs sample-specific, multi-scale AFM image segmentation using a Convolutional Autoencoder.</p> <p> </p> <p><strong>Module 2: AFM Height–Length Profile Viewer</strong></p> <p>Computes height–length profiles along fibrillar structures from AFM height maps. The module uses the segmentation per-pixel vote map (generated by Module 1) to:</p> <ul> <li> Extract height profiles along their centerlines</li> <li> Compute structural parameters</li> <li> Enable 3D surface visualization</li> </ul> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_19251049 |
| institution | Zenodo |
| language | |
| publishDate | 2026 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | AFM-Morph: AFM Fibrillar Structure Segmentation and Height–Length Profiling Kotsa, Christina <p>A workflow based on Streamlit for AFM fibrillar structure segmentation, height–length analysis, and 3D reconstruction.</p> <p>The workflow is split into two main modules:</p> <p> </p> <p><strong>Module 1: AFM Structure Segmentation (CAE-based)</strong></p> <p> Performs sample-specific, multi-scale AFM image segmentation using a Convolutional Autoencoder.</p> <p> </p> <p><strong>Module 2: AFM Height–Length Profile Viewer</strong></p> <p>Computes height–length profiles along fibrillar structures from AFM height maps. The module uses the segmentation per-pixel vote map (generated by Module 1) to:</p> <ul> <li> Extract height profiles along their centerlines</li> <li> Compute structural parameters</li> <li> Enable 3D surface visualization</li> </ul> |
| title | AFM-Morph: AFM Fibrillar Structure Segmentation and Height–Length Profiling |
| url | https://doi.org/10.5281/zenodo.19251049 |