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| Format: | Recurso digital |
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Zenodo
2026
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| Online Access: | https://doi.org/10.5281/zenodo.19771118 |
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| _version_ | 1866901848928026624 |
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| author | Hawlicki, Jan |
| author_facet | Hawlicki, Jan |
| contents | <p>This release focuses on fixing data loss during spine and dendrite import from Imaris Excel files, and removes platform-specific launcher scripts.<br> Fixed</p> <ul> <li>First data row was always skipped during spine import due to a hardcoded row offset; all subsequent value/spine-type pairings were shifted by one.</li> <li>Import silently capped at 200 rows per sheet; the cap is removed.</li> <li>.xls import produced NaN in the first two rows due to a pandas index label mismatch.</li> <li>Spine Part Max Diameter and Spine Part Volume sheets were never imported because the old parameter names did not match the actual Imaris sheet names.</li> <li>Wrong value column selected for Spine Part Max Diameter and Spine Part Volume; the correct *Head column is now resolved via an explicit header map.</li> <li>Column-0 fallback was applied unconditionally for multi-column sheets; it now consults a per-sheet override table.</li> <li>Dendrite No. Spines sheet was not collected due to header detection failure.</li> <li>Branch depth count and Sholl intersections each skipped their first data segment; loops now start at the correct row.</li> </ul> <p>Removed</p> <ul> <li>Windows .bat launcher scripts (RUN.bat, RUN_PORTABLE.bat, etc.) — use python run.py directly.</li> <li>docs/portable-setup.md and docs/postgresql-setup.md — content merged into README.md.</li> </ul> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_19771118 |
| institution | Zenodo |
| language | |
| publishDate | 2026 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | NeuroTrace v2.0.2 - Python tool for handeling IMARIS datasets with metadata tracking Hawlicki, Jan <p>This release focuses on fixing data loss during spine and dendrite import from Imaris Excel files, and removes platform-specific launcher scripts.<br> Fixed</p> <ul> <li>First data row was always skipped during spine import due to a hardcoded row offset; all subsequent value/spine-type pairings were shifted by one.</li> <li>Import silently capped at 200 rows per sheet; the cap is removed.</li> <li>.xls import produced NaN in the first two rows due to a pandas index label mismatch.</li> <li>Spine Part Max Diameter and Spine Part Volume sheets were never imported because the old parameter names did not match the actual Imaris sheet names.</li> <li>Wrong value column selected for Spine Part Max Diameter and Spine Part Volume; the correct *Head column is now resolved via an explicit header map.</li> <li>Column-0 fallback was applied unconditionally for multi-column sheets; it now consults a per-sheet override table.</li> <li>Dendrite No. Spines sheet was not collected due to header detection failure.</li> <li>Branch depth count and Sholl intersections each skipped their first data segment; loops now start at the correct row.</li> </ul> <p>Removed</p> <ul> <li>Windows .bat launcher scripts (RUN.bat, RUN_PORTABLE.bat, etc.) — use python run.py directly.</li> <li>docs/portable-setup.md and docs/postgresql-setup.md — content merged into README.md.</li> </ul> |
| title | NeuroTrace v2.0.2 - Python tool for handeling IMARIS datasets with metadata tracking |
| url | https://doi.org/10.5281/zenodo.19771118 |