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| Format: | Recurso digital |
| Language: | English |
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2026
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| Online Access: | https://doi.org/10.5281/zenodo.19894919 |
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| _version_ | 1866902044912123904 |
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| author | Seixas, Fernando |
| author_facet | Seixas, Fernando |
| contents | <div> <div># Hcharithonia-inversions</div> <div>Code used for the Science Advances manuscript Seixas et al. 2026 'Ancient inversion polymorphisms are locally adaptive in a widespread butterfly species', describing the biogeography of *H. charithonia* and the role of inversions in facilitating local adaptation.</div> <br> <div>The folder 0.dataTreatment contains all scripts used to read filtering and mapping, SNP calling and filtering, as well as converting VCFs to geno format</div> <br> <div>The folder 1.dataAnalyses contains the scripts used to perform the different analyses.</div> <div>1.PopStructure_Demography – Scripts to describe population structure (PCA, phylonetwork, mtDNA phylogeny, admixture graph, etc...)</div> <div>2.Detecing_Inversions – Scripts for detection and confirmation of the inversions (localPCA, PCA and heterozigosity, LD, genome alignments, etc.)</div> <div>3.InversionsEvolutionaryHistory – Scripts to infer the phylogeny at the inversions and whether these could have been shared by introgression</div> <div>4.Underdominance – Scripts to test whether the long term maintenance of the inversion polymorphisms could have been maintained by underdominance, based on HWE and indirect measures of mutational load.</div> <div>5.LocalAdaptation – Scripts to describe how inversions are distributed geographically and test whether inversion genotypes show significant associations with environmental variables extracted from WorldClim</div> <div>6.GeneFlux – Scripts to tests whether the absence of a signal of mutational load can be facilitated by gene flux between inversions haplotypes.</div> </div> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_19894919 |
| institution | Zenodo |
| language | eng |
| publishDate | 2026 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | •Ancient inversion polymorphisms are locally adaptive in a widespread butterfly species Seixas, Fernando Evolutionary biology Chromosome Inversion Adaptation, Biological <div> <div># Hcharithonia-inversions</div> <div>Code used for the Science Advances manuscript Seixas et al. 2026 'Ancient inversion polymorphisms are locally adaptive in a widespread butterfly species', describing the biogeography of *H. charithonia* and the role of inversions in facilitating local adaptation.</div> <br> <div>The folder 0.dataTreatment contains all scripts used to read filtering and mapping, SNP calling and filtering, as well as converting VCFs to geno format</div> <br> <div>The folder 1.dataAnalyses contains the scripts used to perform the different analyses.</div> <div>1.PopStructure_Demography – Scripts to describe population structure (PCA, phylonetwork, mtDNA phylogeny, admixture graph, etc...)</div> <div>2.Detecing_Inversions – Scripts for detection and confirmation of the inversions (localPCA, PCA and heterozigosity, LD, genome alignments, etc.)</div> <div>3.InversionsEvolutionaryHistory – Scripts to infer the phylogeny at the inversions and whether these could have been shared by introgression</div> <div>4.Underdominance – Scripts to test whether the long term maintenance of the inversion polymorphisms could have been maintained by underdominance, based on HWE and indirect measures of mutational load.</div> <div>5.LocalAdaptation – Scripts to describe how inversions are distributed geographically and test whether inversion genotypes show significant associations with environmental variables extracted from WorldClim</div> <div>6.GeneFlux – Scripts to tests whether the absence of a signal of mutational load can be facilitated by gene flux between inversions haplotypes.</div> </div> |
| title | •Ancient inversion polymorphisms are locally adaptive in a widespread butterfly species |
| topic | Evolutionary biology Chromosome Inversion Adaptation, Biological |
| url | https://doi.org/10.5281/zenodo.19894919 |