Analysis code for spatial immune microenvironment succession during sequential biologic therapy in ulcerative colitis
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| Format: | Recurso digital |
| Langue: | anglais |
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Zenodo
2026
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| _version_ | 1866901722852491264 |
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| author | Li, Jiayi Li, Chujia Li, Zhangxin Li, Haolin Li, Huizhen Feng, Zelin Yi, Qinghua Sun, Guangyong Zhang, Dong Sheng, Jianpeng Cao, Xiaocang Liu, Xinjuan |
| author_facet | Li, Jiayi Li, Chujia Li, Zhangxin Li, Haolin Li, Huizhen Feng, Zelin Yi, Qinghua Sun, Guangyong Zhang, Dong Sheng, Jianpeng Cao, Xiaocang Liu, Xinjuan |
| contents | <p>This software archive contains Jupyter Notebook analysis scripts used to generate figures and spatial immune microenvironment analyses for the associated manuscript <em>Spatial Immune Microenvironment Succession During Sequential Biologic Therapy: Evidence from a Patient with Refractory Ulcerative Colitis</em>.</p><p>The notebooks support imaging mass cytometry-based single-cell annotation, immune cell composition analysis, macrophage subset analysis, distance-based spatial analysis, macrophage-centered neighborhood analysis, cumulative distribution function analysis, and figure generation across five disease periods: baseline active disease (P1), infliximab-induced remission (P2), secondary loss of response to infliximab (P3), vedolizumab non-response (P4), and ustekinumab-induced remission (P5).</p><p>The MIT License applies to the code and software documentation only. Clinical data, raw imaging mass cytometry data, original tissue-section images, patient-derived materials, and other non-code research data are not covered by this software license.</p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_20094910 |
| institution | Zenodo |
| language | eng |
| publishDate | 2026 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | Analysis code for spatial immune microenvironment succession during sequential biologic therapy in ulcerative colitis Li, Jiayi Li, Chujia Li, Zhangxin Li, Haolin Li, Huizhen Feng, Zelin Yi, Qinghua Sun, Guangyong Zhang, Dong Sheng, Jianpeng Cao, Xiaocang Liu, Xinjuan imaging mass cytometry ulcerative colitis spatial immunology immune microenvironment biologic therapy infliximab vedolizumab ustekinumab macrophage T cell Jupyter Notebook <p>This software archive contains Jupyter Notebook analysis scripts used to generate figures and spatial immune microenvironment analyses for the associated manuscript <em>Spatial Immune Microenvironment Succession During Sequential Biologic Therapy: Evidence from a Patient with Refractory Ulcerative Colitis</em>.</p><p>The notebooks support imaging mass cytometry-based single-cell annotation, immune cell composition analysis, macrophage subset analysis, distance-based spatial analysis, macrophage-centered neighborhood analysis, cumulative distribution function analysis, and figure generation across five disease periods: baseline active disease (P1), infliximab-induced remission (P2), secondary loss of response to infliximab (P3), vedolizumab non-response (P4), and ustekinumab-induced remission (P5).</p><p>The MIT License applies to the code and software documentation only. Clinical data, raw imaging mass cytometry data, original tissue-section images, patient-derived materials, and other non-code research data are not covered by this software license.</p> |
| title | Analysis code for spatial immune microenvironment succession during sequential biologic therapy in ulcerative colitis |
| topic | imaging mass cytometry ulcerative colitis spatial immunology immune microenvironment biologic therapy infliximab vedolizumab ustekinumab macrophage T cell Jupyter Notebook |
| url | https://doi.org/10.5281/zenodo.20094910 |