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| Natura: | Recurso digital |
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Zenodo
2026
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| Accesso online: | https://doi.org/10.5281/zenodo.20111662 |
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| _version_ | 1866901672957050880 |
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| author | Ye, Hehao Zhou, Zichen Carpenter, Fiona L. Liu, Huaxi Vogler, Alfried P. |
| author_facet | Ye, Hehao Zhou, Zichen Carpenter, Fiona L. Liu, Huaxi Vogler, Alfried P. |
| contents | <p>This deposit contains the primary data products supporting an updated phylogenomic analysis of Coleoptera (beetles) based on a Coleoptera-specific BUSCO ortholog set (coleoptera_odb12, 3,729 loci). The dataset comprises 263 beetles (104 families, 210 subfamilies) and 13 outgroups, with 2,280 loci retained after sequence- and tree-based filtering and analysed under multiple substitution models, recoding schemes, and coalescent methods at five taxon-occupancy thresholds (50-90%).</p> <p><strong>Code availability</strong>: Pipeline code (assembly, ortholog extraction, locus filtering, tree inference, post-processing) is available on GitHub: <a href="https://github.com/jerryye333/coleoptera-busco-phylogenomics.git">https://github.com/jerryye333/coleoptera-busco-phylogenomics</a>, archived as Zenodo [10.5281/zenodo.20102280].</p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_20111662 |
| institution | Zenodo |
| language | |
| publishDate | 2026 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | Phylogenomic dataset for "An updated phylogenomic tree of Coleoptera (beetles) Ye, Hehao Zhou, Zichen Carpenter, Fiona L. Liu, Huaxi Vogler, Alfried P. <p>This deposit contains the primary data products supporting an updated phylogenomic analysis of Coleoptera (beetles) based on a Coleoptera-specific BUSCO ortholog set (coleoptera_odb12, 3,729 loci). The dataset comprises 263 beetles (104 families, 210 subfamilies) and 13 outgroups, with 2,280 loci retained after sequence- and tree-based filtering and analysed under multiple substitution models, recoding schemes, and coalescent methods at five taxon-occupancy thresholds (50-90%).</p> <p><strong>Code availability</strong>: Pipeline code (assembly, ortholog extraction, locus filtering, tree inference, post-processing) is available on GitHub: <a href="https://github.com/jerryye333/coleoptera-busco-phylogenomics.git">https://github.com/jerryye333/coleoptera-busco-phylogenomics</a>, archived as Zenodo [10.5281/zenodo.20102280].</p> |
| title | Phylogenomic dataset for "An updated phylogenomic tree of Coleoptera (beetles) |
| url | https://doi.org/10.5281/zenodo.20111662 |