BCR + GEX Tutorial Dataset: Single-cell BCR and gene expression data from tumor-draining lymph node and primary tumor of an ovarian cancer patient
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2026
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| _version_ | 1866901897357557760 |
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| author | Nathan, Nachi |
| author_facet | Nathan, Nachi |
| contents | <p class="font-claude-response-body break-words whitespace-normal leading-[1.7]">Analysis-ready single-cell input data from one ovarian cancer patient, used in the BCR + GEX Integration Tutorial. The dataset includes paired lymph node (P1_LN) and primary tumor (P1_PT) samples from the same patient, originally published in Nathan et al. (2026, Immunity).</p> <p class="font-claude-response-body break-words whitespace-normal leading-[1.7]">Files include Cell Ranger GEX output (.h5 count matrices) and Cell Ranger VDJ output (filtered_contig.fasta, filtered_contig_annotations.csv, and airr_rearrangement.tsv for each sample). These files serve as starting inputs for the three-part tutorial hosted at <a class="underline underline underline-offset-2 decoration-1 decoration-current/40 hover:decoration-current focus:decoration-current" href="https://github.com/Part-coder-part-batman">https://github.com/Part-coder-part-batman</a>. Pipeline outputs (processed BCR tables and annotated Seurat objects) are available in a separate Zenodo deposit at <a class="underline underline underline-offset-2 decoration-1 decoration-current/40 hover:decoration-current focus:decoration-current" href="https://zenodo.org/records/20324083">https://zenodo.org/records/20324083</a>.</p> <p class="font-claude-response-body break-words whitespace-normal leading-[1.7]">Raw sequencing data are available on GEO under accession GSE319733.</p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_20323951 |
| institution | Zenodo |
| language | |
| publishDate | 2026 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | BCR + GEX Tutorial Dataset: Single-cell BCR and gene expression data from tumor-draining lymph node and primary tumor of an ovarian cancer patient Nathan, Nachi Immcantation Single-Cell Analysis GEX BCR Lymph/immunology Lymph Nodes HGSOC Seurat <p class="font-claude-response-body break-words whitespace-normal leading-[1.7]">Analysis-ready single-cell input data from one ovarian cancer patient, used in the BCR + GEX Integration Tutorial. The dataset includes paired lymph node (P1_LN) and primary tumor (P1_PT) samples from the same patient, originally published in Nathan et al. (2026, Immunity).</p> <p class="font-claude-response-body break-words whitespace-normal leading-[1.7]">Files include Cell Ranger GEX output (.h5 count matrices) and Cell Ranger VDJ output (filtered_contig.fasta, filtered_contig_annotations.csv, and airr_rearrangement.tsv for each sample). These files serve as starting inputs for the three-part tutorial hosted at <a class="underline underline underline-offset-2 decoration-1 decoration-current/40 hover:decoration-current focus:decoration-current" href="https://github.com/Part-coder-part-batman">https://github.com/Part-coder-part-batman</a>. Pipeline outputs (processed BCR tables and annotated Seurat objects) are available in a separate Zenodo deposit at <a class="underline underline underline-offset-2 decoration-1 decoration-current/40 hover:decoration-current focus:decoration-current" href="https://zenodo.org/records/20324083">https://zenodo.org/records/20324083</a>.</p> <p class="font-claude-response-body break-words whitespace-normal leading-[1.7]">Raw sequencing data are available on GEO under accession GSE319733.</p> |
| title | BCR + GEX Tutorial Dataset: Single-cell BCR and gene expression data from tumor-draining lymph node and primary tumor of an ovarian cancer patient |
| topic | Immcantation Single-Cell Analysis GEX BCR Lymph/immunology Lymph Nodes HGSOC Seurat |
| url | https://doi.org/10.5281/zenodo.20323951 |