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| Format: | Recurso digital |
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Zenodo
2026
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| Online Access: | https://doi.org/10.5281/zenodo.20430617 |
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| _version_ | 1866902167162454016 |
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| author | Jansen, Daan De Souza Novaes, Ane de Block, Tessa Rezende, Antonio Mauro Vercauteren, Koen |
| author_facet | Jansen, Daan De Souza Novaes, Ane de Block, Tessa Rezende, Antonio Mauro Vercauteren, Koen |
| contents | Metatropics is a Nextflow pipeline for Oxford Nanopore metagenomic reads, focused on detecting human viral pathogens and creating viral consensus genomes. Workflows start from raw POD5 (with optional GPU basecalling) or pre-basecalled FASTQ, then proceed with read quality control, alignment, host depletion, and taxonomic profiling, followed by consensus genome building—polishing, refinement, and consensus calling. One container image per process keeps runs portable and reproducible under Docker, Singularity/Apptainer, and typical HPC setups. |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_20430617 |
| institution | Zenodo |
| language | |
| publishDate | 2026 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | Metatropics: Human viral pathogen identification and consensus genome calling from nanopore metagenomic sequencing data. Jansen, Daan De Souza Novaes, Ane de Block, Tessa Rezende, Antonio Mauro Vercauteren, Koen Metatropics is a Nextflow pipeline for Oxford Nanopore metagenomic reads, focused on detecting human viral pathogens and creating viral consensus genomes. Workflows start from raw POD5 (with optional GPU basecalling) or pre-basecalled FASTQ, then proceed with read quality control, alignment, host depletion, and taxonomic profiling, followed by consensus genome building—polishing, refinement, and consensus calling. One container image per process keeps runs portable and reproducible under Docker, Singularity/Apptainer, and typical HPC setups. |
| title | Metatropics: Human viral pathogen identification and consensus genome calling from nanopore metagenomic sequencing data. |
| url | https://doi.org/10.5281/zenodo.20430617 |