vRAPID: Virus Reference-based Assembly Pipeline and IDentification
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2023
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| _version_ | 1866902140468854784 |
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| author | Zain Khalil Mitch Sullivan Ana S. Gonzalez-Reiche Ajay Obla Harm van Bakel |
| author_facet | Zain Khalil Mitch Sullivan Ana S. Gonzalez-Reiche Ajay Obla Harm van Bakel |
| contents | <p>The Virus Reference-based Assembly Pipeline and IDentification (vRAPID) tool runs the assembly, consensus calling, and annotation of viral pathogen genomes.</p> <p>vRAPID relies on data structures and naming conventions used by the <a href="https://www.ceirr-network.org/centers/cript">Center for Research on Influenza Pathogenesis and Transmission (CRIPT)</a> and the <a href="https://icahn.mssm.edu/research/genomics/research/microbial-genomics-pathogen-surveillance">Mount Sinai Pathogen Surveillance Program (MS-PSP)</a> at the Icahn School of Medicine at Mount Sinai. vRAPID is an expansion of the <a href="https://github.com/mjsull/COVID_pipe">COVID_pipe</a> pipeline that was written by Mitchell Sullivan in the Bakel Lab. Complete documentation is available <a href="https://github.com/BakelLab/vRAPID">here</a>.</p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_7829342 |
| institution | Zenodo |
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| publishDate | 2023 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | vRAPID: Virus Reference-based Assembly Pipeline and IDentification Zain Khalil Mitch Sullivan Ana S. Gonzalez-Reiche Ajay Obla Harm van Bakel reference-based genome assembly genome annotation virus sequencing <p>The Virus Reference-based Assembly Pipeline and IDentification (vRAPID) tool runs the assembly, consensus calling, and annotation of viral pathogen genomes.</p> <p>vRAPID relies on data structures and naming conventions used by the <a href="https://www.ceirr-network.org/centers/cript">Center for Research on Influenza Pathogenesis and Transmission (CRIPT)</a> and the <a href="https://icahn.mssm.edu/research/genomics/research/microbial-genomics-pathogen-surveillance">Mount Sinai Pathogen Surveillance Program (MS-PSP)</a> at the Icahn School of Medicine at Mount Sinai. vRAPID is an expansion of the <a href="https://github.com/mjsull/COVID_pipe">COVID_pipe</a> pipeline that was written by Mitchell Sullivan in the Bakel Lab. Complete documentation is available <a href="https://github.com/BakelLab/vRAPID">here</a>.</p> |
| title | vRAPID: Virus Reference-based Assembly Pipeline and IDentification |
| topic | reference-based genome assembly genome annotation virus sequencing |
| url | https://doi.org/10.5281/zenodo.7829342 |